If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ), 'gf_id' => 'HOM05D000799', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000799' ), 'data_identifier' => 'HOM05D000799', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000799', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p00270' => 'bna', 'A03p12040' => 'bna', 'A06p20400' => 'bna', 'A07p12100' => 'bna', 'A08p26550' => 'bna', 'A09p38760' => 'bna', 'A09p63230' => 'bna', 'Aa31LG11G560' => 'aar', 'Aa31LG1G1600' => 'aar', 'Aa31LG1G23150' => 'aar', 'Aa31LG7G9590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5535' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5116' => 'aag', 'Actinidia01891' => 'ach', 'Actinidia05617' => 'ach', 'Actinidia08104' => 'ach', 'Actinidia08853' => 'ach', 'Actinidia11594' => 'ach', 'Actinidia16088' => 'ach', 'Actinidia25161' => 'ach', 'Actinidia29105' => 'ach', 'Actinidia30690' => 'ach', 'Actinidia36785' => 'ach', 'Actinidia39454' => 'ach', 'Ah.02g130480' => 'amhyb', 'Ah.03g133690' => 'amhyb', 'Ah.08g218260' => 'amhyb', 'Ah.14g089360' => 'amhyb', 'Ah.15g095360' => 'amhyb', 'AL1G24880' => 'aly', 'AL1G40500' => 'aly', 'AL5G26420' => 'aly', 'AL6G10530' => 'aly', 'AL8G35080' => 'aly', 'Aqoxy3G03274' => 'aox', 'Aqoxy4G01031' => 'aox', 'Aqoxy4G01779' => 'aox', 'Aqoxy4G02596' => 'aox', 'Aqoxy5G03592' => 'aox', 'Aqoxy5G03603' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0093F6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0RIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2M1ED9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GA5XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DK0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Q3TNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78HSHP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1G1AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG670U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQSU07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8DXKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWG2KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9JIH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3RHVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU6EK0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF91KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR4RW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M34HWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEZ0IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQRA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF23H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CSJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGD34M' => 'arhy', 'AT1G13195' => 'ath', 'AT1G24440' => 'ath', 'AT3G47160' => 'ath', 'AT5G01520' => 'ath', 'AT5G58787' => 'ath', 'ATR0618G208' => 'atr', 'ATR0680G107' => 'atr', 'ATR0824G249' => 'atr', 'Atru.chr10.1917' => 'acertr', 'Atru.chr11.2209' => 'acertr', 'Atru.chr11.2212' => 'acertr', 'Atru.chr3.4228' => 'acertr', 'Atru.chr8.2230' => 'acertr', 'Atru.chr8.2231' => 'acertr', 'Atru.chr9.1002' => 'acertr', 'AUR62001270' => 'cqu', 'AUR62001654' => 'cqu', 'AUR62005546' => 'cqu', 'AUR62005549' => 'cqu', 'AUR62014799' => 'cqu', 'AUR62016990' => 'cqu', 'AUR62020122' => 'cqu', 'AUR62024183' => 'cqu', 'AUR62024187' => 'cqu', 'AUR62025736' => 'cqu', 'BcaB01g00941' => 'bca', 'BcaB01g04494' => 'bca', 'BcaB01g04636' => 'bca', 'BcaB01g04638' => 'bca', 'BcaB01g06101' => 'bca', 'BcaB01g06232' => 'bca', 'BcaB03g12059' => 'bca', 'BcaB06g27833' => 'bca', 'BcaC01g01644' => 'bca', 'BcaC01g01846' => 'bca', 'BcaC04g19850' => 'bca', 'BcaC05g25076' => 'bca', 'BcaC05g26526' => 'bca', 'BcaC05g26721' => 'bca', 'BcaC06g35264' => 'bca', 'BcaC07g41661' => 'bca', 'BolC3t12609H' => 'bol', 'BolC3t13859H' => 'bol', 'BolC3t19424H' => 'bol', 'BolC3t19642H' => 'bol', 'BolC5t29761H' => 'bol', 'BolC5t31304H' => 'bol', 'BolC7t42314H' => 'bol', 'BolC8t52211H' => 'bol', 'BolC9t57956H' => 'bol', 'BraA03t09418Z' => 'bra', 'BraA03t10515Z' => 'bra', 'BraA06t24050Z' => 'bra', 'BraA06t25115Z' => 'bra', 'BraA07t28998Z' => 'bra', 'BraA08t34607Z' => 'bra', 'BraA09t39384Z' => 'bra', 'BraA09t41675Z' => 'bra', 'C03p00420' => 'bna', 'C03p14130' => 'bna', 'C03p71410' => 'bna', 'C03p73470' => 'bna', 'C05p10150' => 'bna', 'C05p25840' => 'bna', 'C07p18060' => 'bna', 'C08p46720' => 'bna', 'CAN.G1139.11' => 'can', 'CAN.G1164.44' => 'can', 'CAN.G49.5' => 'can', 'CANSAT01G0513' => 'cansat', 'CANSAT01G2916' => 'cansat', 'CANSAT35G1336' => 'cansat', 'CANSAT35G1948' => 'cansat', 'CANSAT54G2623' => 'cansat', 'CANSAT80G2330' => 'cansat', 'CARHR013570' => 'chi', 'CARHR026690' => 'chi', 'CARHR155850' => 'chi', 'CARHR211880' => 'chi', 'CARHR272730' => 'chi', 'Carub.0001s1293' => 'cru', 'Carub.0001s2567' => 'cru', 'Carub.0005s1336' => 'cru', 'Carub.0006s0031' => 'cru', 'Carub.0008s1943' => 'cru', 'Ca_00307_v3' => 'car', 'Ca_07632_v3' => 'car', 'Ca_09131_v3' => 'car', 'Ca_14928_v3' => 'car', 'Ca_18534_v3' => 'car', 'Ca_25117_v3' => 'car', 'CBR_g54820' => 'cbr', 'Cc01_g14150' => 'ccan', 'Cc02_g13140' => 'ccan', 'Cc04_g10500' => 'ccan', 'Cc06_g01440' => 'ccan', 'Cc11_g16300' => 'ccan', 'Cc11_g16320' => 'ccan', 'CDE04G3066' => 'cde', 'CDE05G3317' => 'cde', 'CDE08G0125' => 'cde', 'CDE08G0556' => 'cde', 'CDE09G0262' => 'cde', 'CDE11G0253' => 'cde', 'Cfa000421' => 'cfa', 'Cfa001039' => 'cfa', 'Cfa009279' => 'cfa', 'Cfa009281' => 'cfa', 'Cfa017212' => 'cfa', 'Cfa018897' => 'cfa', 'Ciclev10012601m.g' => 'ccl', 'Ciclev10016413m.g' => 'ccl', 'Ciclev10029178m.g' => 'ccl', 'Ciclev10032496m.g' => 'ccl', 'Ciclev10032536m.g' => 'ccl', 'CiPaw.05G175200' => 'cil', 'CiPaw.05G175400' => 'cil', 'CiPaw.09G057900' => 'cil', 'CiPaw.09G208800' => 'cil', 'CiPaw.10G096800' => 'cil', 'CiPaw.10G156200' => 'cil', 'CiPaw.11G012800' => 'cil', 'CiPaw.12G035500' => 'cil', 'CiPaw.13G078200' => 'cil', 'ClCG01G022860' => 'cla', 'ClCG03G000800' => 'cla', 'ClCG03G003460' => 'cla', 'ClCG05G026200' => 'cla', 'ClCG05G026220' => 'cla', 'ClCG08G017470' => 'cla', 'ClCG10G022090' => 'cla', 'COL.COLO4_08556' => 'col', 'COL.COLO4_14543' => 'col', 'COL.COLO4_19148' => 'col', 'COL.COLO4_23557' => 'col', 'COL.COLO4_23561' => 'col', 'Cpa.g.sc11.166' => 'cpa', 'Cpa.g.sc112.30' => 'cpa', 'Cpa.g.sc27.61' => 'cpa', 'Cpa.g.sc4.65' => 'cpa', 'Cpa.g.sc86.13' => 'cpa', 'Cpa.g.sc86.16' => 'cpa', 'CsaV3_1G009260' => 'csa', 'CsaV3_1G036140' => 'csa', 'CsaV3_2G025150' => 'csa', 'CsaV3_3G033840' => 'csa', 'CsaV3_5G030620' => 'csa', 'CsaV3_5G030640' => 'csa', 'CsaV3_6G050040' => 'csa', 'CSS0000993' => 'camsi', 'CSS0001077' => 'camsi', 'CSS0004994' => 'camsi', 'CSS0009286' => 'camsi', 'CSS0020258' => 'camsi', 'CSS0020462' => 'camsi', 'CSS0020608' => 'camsi', 'CSS0027070' => 'camsi', 'CSS0034574' => 'camsi', 'CSS0036581' => 'camsi', 'CSS0039989' => 'camsi', 'DCAR_004083' => 'dca', 'DCAR_007025' => 'dca', 'DCAR_008043' => 'dca', 'DCAR_015425' => 'dca', 'DCAR_018705' => 'dca', 'DCAR_026488' => 'dca', 'DCAR_026490' => 'dca', 'Dinv07541' => 'din', 'Dinv11017' => 'din', 'Dinv11019' => 'din', 'Dinv14446' => 'din', 'Dinv14774' => 'din', 'Dinv14776' => 'din', 'Dinv23098' => 'din', 'Dinv28636' => 'din', 'Dinv38478' => 'din', 'Dinv40541' => 'din', 'Duzib068G1426' => 'dzi', 'Duzib084G0872' => 'dzi', 'Duzib093G1329' => 'dzi', 'Duzib106G0571' => 'dzi', 'Duzib150G0380' => 'dzi', 'Duzib160G0851' => 'dzi', 'Duzib168G0002' => 'dzi', 'Duzib205G1544' => 'dzi', 'Duzib235G0329' => 'dzi', 'Duzib248G0663' => 'dzi', 'Duzib251G0165' => 'dzi', 'Duzib251G0364' => 'dzi', 'Duzib268G1195' => 'dzi', 'Duzib268G1511' => 'dzi', 'Duzib268G1742' => 'dzi', 'ECA232G1545' => 'eca', 'ECA233G3225' => 'eca', 'ECA234G1826' => 'eca', 'ECA234G3430' => 'eca', 'ECA236G0198' => 'eca', 'ECA247G2896' => 'eca', 'ECA248G1286' => 'eca', 'EL10Ac7g16157' => 'bvu', 'EL10Ac7g18066' => 'bvu', 'EL10Ac8g20359' => 'bvu', 'EL10As2g23232' => 'bvu', 'EL10As2g23236' => 'bvu', 'Eucgr.A00505' => 'egr', 'Eucgr.B03230' => 'egr', 'Eucgr.D00636' => 'egr', 'Eucgr.E03147' => 'egr', 'Eucgr.E03345' => 'egr', 'Eucgr.H04695' => 'egr', 'Eucgr.H04696' => 'egr', 'Eucgr.J01918' => 'egr', 'FAN02G2322' => 'fan', 'FAN04G2232' => 'fan', 'FAN05G3942' => 'fan', 'FAN07G0082' => 'fan', 'FAN07G1976' => 'fan', 'FAN08G2821' => 'fan', 'FAN09G0668' => 'fan', 'FAN11G2852' => 'fan', 'FAN11G3990' => 'fan', 'FAN12G1615' => 'fan', 'FAN12G3241' => 'fan', 'FAN13G2260' => 'fan', 'FAN14G2425' => 'fan', 'FAN14G2817' => 'fan', 'FAN16G1960' => 'fan', 'FAN16G3585' => 'fan', 'FAN17G1571' => 'fan', 'FAN17G2582' => 'fan', 'FAN18G0152' => 'fan', 'FAN21G0863' => 'fan', 'FAN21G1427' => 'fan', 'FAN22G0502' => 'fan', 'FAN22G2158' => 'fan', 'FAN25G0126' => 'fan', 'FAN25G1543' => 'fan', 'FvH4_3g04920' => 'fve', 'FvH4_3g38470' => 'fve', 'FvH4_4g24880' => 'fve', 'FvH4_4g24910' => 'fve', 'FvH4_5g07270' => 'fve', 'FvH4_6g11510' => 'fve', 'Glyma.03G060000' => 'gma', 'Glyma.05G044700' => 'gma', 'Glyma.05G144300' => 'gma', 'Glyma.07G148900' => 'gma', 'Glyma.07G195400' => 'gma', 'Glyma.08G100700' => 'gma', 'Glyma.11G246100' => 'gma', 'Glyma.11G246300' => 'gma', 'Glyma.13G180900' => 'gma', 'Glyma.13G240800' => 'gma', 'Glyma.15G072700' => 'gma', 'Glyma.18G010900' => 'gma', 'Glyma.18G011100' => 'gma', 'Glyma.18G063500' => 'gma', 'Glyma.18G200100' => 'gma', 'Gohir.A03G062600' => 'ghi', 'Gohir.A04G089700' => 'ghi', 'Gohir.A04G137600' => 'ghi', 'Gohir.A05G088900' => 'ghi', 'Gohir.A09G072200' => 'ghi', 'Gohir.A10G024400' => 'ghi', 'Gohir.A12G146700' => 'ghi', 'Gohir.A13G224700' => 'ghi', 'Gohir.D03G103500' => 'ghi', 'Gohir.D04G129800' => 'ghi', 'Gohir.D04G180800' => 'ghi', 'Gohir.D05G089900' => 'ghi', 'Gohir.D08G067801' => 'ghi', 'Gohir.D09G071900' => 'ghi', 'Gohir.D10G025100' => 'ghi', 'Gohir.D12G106532' => 'ghi', 'Gohir.D12G151300' => 'ghi', 'Gohir.D13G229700' => 'ghi', 'Gorai.003G074500' => 'gra', 'Gorai.003G109100' => 'gra', 'Gorai.006G086900' => 'gra', 'Gorai.006G204500' => 'gra', 'Gorai.008G162800' => 'gra', 'Gorai.009G092300' => 'gra', 'Gorai.011G026400' => 'gra', 'Gorai.012G113300' => 'gra', 'Gorai.012G174000' => 'gra', 'Gorai.013G260400' => 'gra', 'GSVIVG01002021001' => 'vvi', 'GSVIVG01007553001' => 'vvi', 'GSVIVG01010297001' => 'vvi', 'GSVIVG01010299001' => 'vvi', 'GSVIVG01012325001' => 'vvi', 'GSVIVG01024747001' => 'vvi', 'GSVIVG01033965001' => 'vvi', 'HanXRQChr01g0011411' => 'han', 'HanXRQChr04g0109191' => 'han', 'HanXRQChr04g0124111' => 'han', 'HanXRQChr08g0207291' => 'han', 'HanXRQChr08g0226501' => 'han', 'HanXRQChr09g0245881' => 'han', 'HanXRQChr09g0272841' => 'han', 'HanXRQChr12g0372121' => 'han', 'HanXRQChr16g0510421' => 'han', 'HanXRQChr16g0518161' => 'han', 'HanXRQChr17g0560231' => 'han', 'HanXRQChr17g0560241' => 'han', 'HanXRQChr17g0569241' => 'han', 'Haze_05476' => 'cav', 'Haze_06495' => 'cav', 'Haze_07282' => 'cav', 'Haze_12312' => 'cav', 'Haze_12314' => 'cav', 'Haze_20997' => 'cav', 'Haze_24307' => 'cav', 'Hma1.2p1_0046F.1_g027590' => 'hma', 'Hma1.2p1_0126F.1_g059280' => 'hma', 'Hma1.2p1_0362F.1_g136160' => 'hma', 'Hma1.2p1_0805F.1_g221200' => 'hma', 'Hma1.2p1_0881F.1_g232010' => 'hma', 'HPP92_003345' => 'vpl', 'HPP92_011663' => 'vpl', 'Hund04868' => 'sun', 'Hund06053' => 'sun', 'Hund18536' => 'sun', 'Hund21234' => 'sun', 'Hund23709' => 'sun', 'Hund25425' => 'sun', 'Hund25427' => 'sun', 'Lalb_Chr03g0043321' => 'lal', 'Lalb_Chr05g0218411' => 'lal', 'Lalb_Chr07g0187171' => 'lal', 'Lalb_Chr08g0230791' => 'lal', 'Lalb_Chr09g0327611' => 'lal', 'Lalb_Chr15g0089881' => 'lal', 'Lalb_Chr16g0383681' => 'lal', 'Lalb_Chr19g0124491' => 'lal', 'Lalb_Chr23g0277821' => 'lal', 'Lj1A138T73' => 'lonja', 'Lj1C1207T4' => 'lonja', 'Lj1g0006913' => 'lja', 'Lj2A76T78' => 'lonja', 'Lj3A1063T62' => 'lonja', 'Lj3A1064T92' => 'lonja', 'Lj3A954G64' => 'lonja', 'Lj3g0011499' => 'lja', 'Lj3P1064T32' => 'lonja', 'Lj4g0001071' => 'lja', 'Lj4g0004637' => 'lja', 'Lj4g0005954' => 'lja', 'Lj6A818G49' => 'lonja', 'Lj6g0010674' => 'lja', 'Lj6g0017444' => 'lja', 'Lj6g0019039' => 'lja', 'Lsat_1_v5_gn_1_125641' => 'lsa', 'Lsat_1_v5_gn_4_2401' => 'lsa', 'Lsat_1_v5_gn_4_2440' => 'lsa', 'Lsat_1_v5_gn_4_52740' => 'lsa', 'Lsat_1_v5_gn_4_78940' => 'lsa', 'Lsat_1_v5_gn_5_171420' => 'lsa', 'Lsat_1_v5_gn_7_18961' => 'lsa', 'Lsat_1_v5_gn_8_100521' => 'lsa', 'Lsat_1_v5_gn_8_150380' => 'lsa', 'Lsat_1_v5_gn_9_19220' => 'lsa', 'Manes.02G120000' => 'mes', 'Manes.06G114700' => 'mes', 'Manes.08G092000' => 'mes', 'Manes.12G018000' => 'mes', 'Manes.13G013000' => 'mes', 'Manes.13G013100' => 'mes', 'Manes.14G055500' => 'mes', 'Manes.16G025900' => 'mes', 'Manes.17G043800' => 'mes', 'Mapoly0059s0051' => 'mpo', 'MBI11_g00278_MAGBIO' => 'mbi', 'MBI11_g18546_MAGBIO' => 'mbi', 'MBI11_g36297_MAGBIO' => 'mbi', 'MBI14_g31686_MAGBIO' => 'mbi', 'MBI17_g43192_MAGBIO' => 'mbi', 'MCO15G550' => 'mco', 'MD00G1165600' => 'mdo', 'MD03G1071600' => 'mdo', 'MD04G1151400' => 'mdo', 'MD05G1314700' => 'mdo', 'MD06G1157700' => 'mdo', 'MD10G1296100' => 'mdo', 'MD11G1075300' => 'mdo', 'MD12G1165500' => 'mdo', 'MD13G1107900' => 'mdo', 'MD13G1108100' => 'mdo', 'MD13G1108200' => 'mdo', 'MD14G1164300' => 'mdo', 'MD14G1164400' => 'mdo', 'MD16G1107800' => 'mdo', 'MD16G1108200' => 'mdo', 'Medtr2g013080' => 'mtr', 'Medtr3g086130' => 'mtr', 'Medtr3g463720' => 'mtr', 'Medtr4g015600' => 'mtr', 'Medtr4g088950' => 'mtr', 'Medtr7g068290' => 'mtr', 'Medtr8g079910' => 'mtr', 'MELO3C007294.2' => 'cme', 'MELO3C009172.2' => 'cme', 'MELO3C010712.2' => 'cme', 'MELO3C011905.2' => 'cme', 'MELO3C011907.2' => 'cme', 'MELO3C020554.2' => 'cme', 'MELO3C035743.2' => 'cme', 'Migut.I00259' => 'egut', 'Migut.J00178' => 'egut', 'Migut.K00675' => 'egut', 'Migut.K00677' => 'egut', 'Migut.L02009' => 'egut', 'Migut.M01193' => 'egut', 'MSTRG.10223' => 'ama', 'MSTRG.15918' => 'ama', 'MSTRG.539' => 'ama', 'MSTRG.5579' => 'ama', 'MSTRG.7302' => 'ama', 'MSTRG.7961' => 'ama', 'MSTRG.7964' => 'ama', 'Nitab4.5_0000041g0290' => 'nta', 'Nitab4.5_0000041g0300' => 'nta', 'Nitab4.5_0001765g0010' => 'nta', 'Nitab4.5_0002531g0010' => 'nta', 'Nitab4.5_0003282g0030' => 'nta', 'Nitab4.5_0003666g0030' => 'nta', 'Nitab4.5_0003942g0030' => 'nta', 'Nitab4.5_0004912g0020' => 'nta', 'Nitab4.5_0005954g0010' => 'nta', 'Nitab4.5_0006366g0010' => 'nta', 'Nitab4.5_0012192g0010' => 'nta', 'Nitab4.5_0013250g0020' => 'nta', 'Nitab4.5_0013561g0010' => 'nta', 'Nn1g04040' => 'nnu', 'Nn2g11472' => 'nnu', 'Nn2g13695' => 'nnu', 'Nn3g16585' => 'nnu', 'Nn3g16598' => 'nnu', 'Nn4g22468' => 'nnu', 'Nn4g22474' => 'nnu', 'Oeu011582.1' => 'oeu', 'Oeu012662.1' => 'oeu', 'Oeu014705.1' => 'oeu', 'Oeu038658.1' => 'oeu', 'Oeu043697.1' => 'oeu', 'Oeu044832.1' => 'oeu', 'Oeu054396.1' => 'oeu', 'Oeu059786.1' => 'oeu', 'Os01g0905700' => 'osa', 'Os04g0679800' => 'osa', 'Os07g0275300' => 'osa', 'Os07g0661600' => 'osa', 'Os10g0445400' => 'osa', 'Os10g0500300' => 'osa', 'Peaxi162Scf00009g01815' => 'pax', 'Peaxi162Scf00089g00717' => 'pax', 'Peaxi162Scf00128g00722' => 'pax', 'Peaxi162Scf00128g00726' => 'pax', 'Peaxi162Scf00490g00019' => 'pax', 'Peaxi162Scf00947g00211' => 'pax', 'PGR004G0963' => 'pgr', 'PGR031G0085' => 'pgr', 'PGR031G2599' => 'pgr', 'PGR042G2752' => 'pgr', 'PGR102G1403' => 'pgr', 'PGR119G0936' => 'pgr', 'PGR119G1715' => 'pgr', 'PGR119G2025' => 'pgr', 'PGSC0003DMG400010738' => 'stu', 'PGSC0003DMG400010745' => 'stu', 'PGSC0003DMG400011093' => 'stu', 'PGSC0003DMG400015235' => 'stu', 'PGSC0003DMG400022384' => 'stu', 'PGSC0003DMG400022828' => 'stu', 'Phvul.001G257800' => 'pvu', 'Phvul.001G257900' => 'pvu', 'Phvul.002G177300' => 'pvu', 'Phvul.002G227800' => 'pvu', 'Phvul.003G208101' => 'pvu', 'Phvul.006G067600' => 'pvu', 'Phvul.006G187200' => 'pvu', 'Phvul.008G104900' => 'pvu', 'Phvul.010G002000' => 'pvu', 'Potri.001G250800' => 'ptr', 'Potri.004G041200' => 'ptr', 'Potri.006G099600' => 'ptr', 'Potri.008G181300' => 'ptr', 'Potri.009G045400' => 'ptr', 'Potri.010G052700' => 'ptr', 'Potri.010G053000' => 'ptr', 'Potri.011G050700' => 'ptr', 'Potri.012G093300' => 'ptr', 'Potri.015G089800' => 'ptr', 'Potri.016G115300' => 'ptr', 'Pp3c13_15370' => 'ppa', 'Pp3c3_21640' => 'ppa', 'Pp3c4_24440' => 'ppa', 'Prupe.1G238300' => 'ppe', 'Prupe.1G238500' => 'ppe', 'Prupe.4G044500' => 'ppe', 'Prupe.5G157700' => 'ppe', 'Prupe.6G058200' => 'ppe', 'Prupe.6G276500' => 'ppe', 'Psat1g206320' => 'psa', 'Psat3g129800' => 'psa', 'Psat5g093560' => 'psa', 'Psat5g158720' => 'psa', 'Psat7g079800' => 'psa', 'Psat7g112720' => 'psa', 'Psat7g245840' => 'psa', 'PSO063G0055' => 'pso', 'PSO063G7410' => 'pso', 'PSO210G3346' => 'pso', 'PSO339G0576' => 'pso', 'PSO339G5338' => 'pso', 'PSO384G3879' => 'pso', 'PSO478G4393' => 'pso', 'PSO782G0814' => 'pso', 'PSO782G2239' => 'pso', 'PSO801G0489' => 'pso', 'PSO832G2098' => 'pso', 'QL01p038059' => 'qlo', 'QL05p060824' => 'qlo', 'QL10p005367' => 'qlo', 'QL11p013592' => 'qlo', 'RcHm_v2.0_Chr3g0463221' => 'rch', 'RcHm_v2.0_Chr3g0493731' => 'rch', 'RcHm_v2.0_Chr4g0431951' => 'rch', 'RcHm_v2.0_Chr4g0431971' => 'rch', 'RcHm_v2.0_Chr5g0008081' => 'rch', 'RcHm_v2.0_Chr5g0069171' => 'rch', 'RcHm_v2.0_Chr5g0077461' => 'rch', 'RcHm_v2.0_Chr7g0191361' => 'rch', 'Rhsim02G0127700' => 'rsi', 'Rhsim05G0213200' => 'rsi', 'Rhsim05G0214200' => 'rsi', 'Rhsim12G0037100' => 'rsi', 'Rhsim12G0107600' => 'rsi', 'Rhsim12G0171700' => 'rsi', 'Rhsim13G0070000' => 'rsi', 'Sabra04G0025500' => 'sbr', 'Sabra06G0076500' => 'sbr', 'Sabra08G0138400' => 'sbr', 'Sabra09G0032800' => 'sbr', 'Sabra10G0017500' => 'sbr', 'Sabra10G0017700' => 'sbr', 'Sabra11G0034700' => 'sbr', 'Sabra12G0068000' => 'sbr', 'Sabra16G0111200' => 'sbr', 'SalBow2G0341' => 'sbo', 'Sc01g0006490' => 'sci', 'Sc04g0000990' => 'sci', 'Sc04g0009870' => 'sci', 'Sc07g0006560' => 'sci', 'Sc11g0000780' => 'sci', 'Sc17g0006250' => 'sci', 'Sc24g0000780' => 'sci', 'Sed0001331' => 'sed', 'Sed0001352' => 'sed', 'Sed0001357' => 'sed', 'Sed0002087' => 'sed', 'Sed0005095' => 'sed', 'Sed0018721' => 'sed', 'Sed0019317' => 'sed', 'Sed0020509' => 'sed', 'SEGI_15108' => 'sgi', 'SEGI_17830' => 'sgi', 'SGA_v2.0_scaffold110G31219' => 'sas', 'SGA_v2.0_scaffold114G31966' => 'sas', 'SGA_v2.0_scaffold484G52348' => 'sas', 'SGA_v2.0_scaffold7G03965' => 'sas', 'SGA_v2.0_scaffold7G03968' => 'sas', 'SGA_v2.0_scaffold85G26744' => 'sas', 'SHI01878' => 'shi', 'SHI17905' => 'shi', 'SHI17915' => 'shi', 'SMO172G0008' => 'smo', 'SMO358G0590' => 'smo', 'Solyc02g078460.3' => 'sly', 'Solyc03g111510.3' => 'sly', 'Solyc05g014230.3' => 'sly', 'Solyc05g014250.3' => 'sly', 'Solyc10g009020.3' => 'sly', 'Solyc10g085130.2' => 'sly', 'Sopen02g023310' => 'spe', 'Sopen03g030650' => 'spe', 'Sopen05g009250' => 'spe', 'Sopen05g009270' => 'spe', 'Sopen10g004800' => 'spe', 'Sopen10g034600' => 'spe', 'Sp1g11720' => 'spa', 'Sp1g23360' => 'spa', 'Sp5g14610' => 'spa', 'Sp6g20490' => 'spa', 'Sp6g40800' => 'spa', 'TAR369G0160' => 'tar', 'TAR374G0739' => 'tar', 'TAR374G0894' => 'tar', 'TAR622G0511' => 'tar', 'TAR622G1252' => 'tar', 'TAR623G1107' => 'tar', 'TAR627G0130' => 'tar', 'TAR629G1797' => 'tar', 'TAR633G1576' => 'tar', 'THA.LOC104799400' => 'tha', 'THA.LOC104814911' => 'tha', 'THA.LOC104815173' => 'tha', 'THA.LOC104816190' => 'tha', 'THA.LOC104825533' => 'tha', 'THA.LOC104825686' => 'tha', 'Thecc.02G269700' => 'tca', 'Thecc.02G269900' => 'tca', 'Thecc.03G122100' => 'tca', 'Thecc.05G017000' => 'tca', 'Thecc.06G190200' => 'tca', 'Thecc.09G302500' => 'tca', 'Thhalv10008511m.g' => 'esa', 'Thhalv10008563m.g' => 'esa', 'Thhalv10010665m.g' => 'esa', 'Thhalv10014521m.g' => 'esa', 'Thhalv10014523m.g' => 'esa', 'Thhalv10026811m.g' => 'esa', 'TPR.G11422' => 'tpr', 'TPR.G12126' => 'tpr', 'TPR.G13317' => 'tpr', 'TPR.G14243' => 'tpr', 'TPR.G23972' => 'tpr', 'TPR.G34601' => 'tpr', 'TPR.G34846' => 'tpr', 'TPR.G36764' => 'tpr', 'TPR.G40178' => 'tpr', 'TPR.G8124' => 'tpr', 'TPR.G9560' => 'tpr', 'TWI18G0809' => 'twi', 'TWI18G0927' => 'twi', 'TWI31G0555' => 'twi', 'TWI36G0289' => 'twi', 'TWI38G0349' => 'twi', 'TWI38G1042' => 'twi', 'TWI39G0279' => 'twi', 'TWI53G0869' => 'twi', 'TWI74G1197' => 'twi', 'TWI79G0965' => 'twi', 'unitig_22.g6419' => 'ugi', 'unitig_32.g11530' => 'ugi', 'unitig_37.g12662' => 'ugi', 'unitig_46.g18405' => 'ugi', 'unitig_699.g19942' => 'ugi', 'unitig_748.g7574' => 'ugi', 'unitig_8.g3145' => 'ugi', 'vmacro01098' => 'vma', 'vmacro02967' => 'vma', 'vmacro15898' => 'vma', 'vmacro16151' => 'vma', 'vmacro16705' => 'vma', 'vmacro20258' => 'vma', 'VMungo0251G0747' => 'vmu', 'VMungo0251G1312' => 'vmu', 'VMungo0331G0976' => 'vmu', 'VMungo0540G0224' => 'vmu', 'VMungo0540G0226' => 'vmu', 'VMungo1215G1001' => 'vmu', 'VMungo1383G0456' => 'vmu', 'VMungo1383G2022' => 'vmu', 'VMungo1383G3186' => 'vmu', 'Zm00001eb044410' => 'zma', 'Zm00001eb044480' => 'zma', 'Zm00001eb047060' => 'zma', 'Zm00001eb065980' => 'zma', 'Zm00001eb095050' => 'zma', 'Zm00001eb110910' => 'zma', 'Zm00001eb144260' => 'zma', 'Zm00001eb162170' => 'zma', 'Zm00001eb304990' => 'zma', 'Zm00001eb358280' => 'zma', 'Zm00001eb433880' => 'zma' ) $gf_id = 'HOM05D000799' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000799' ) $data_identifier = 'HOM05D000799' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 23, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 3, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 15, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1